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plantcare_plot

plantcare_plot.Rd

Visualization of cis-element in plantcare result file

Usage

plantcare_plot(
  plantcare_file,
  promoter_length = 2000,
  the_order = NULL,
  shape = "Rect",
  r = 6,
  legend_size = 15,
  element_color = NULL
)

Arguments

plantcare_file

The path of plantcare result file (.tab).

promoter_length

The promoter length.

the_order

The path of order file. A List of Gene ID , One ID Per Line.

shape

RoundRect or Rect.

r

The radius of rounded corners.

legend_size

The size of legend.

element_color

The color set of cis-element.

Value

p

Author

Shiqi Zhao

Examples

plantcare_path <- system.file("extdata", "plantCARE_output.tab", package = "BioVizSeq") 
plantcare_plot(plantcare_path, promoter_length = 2000)