pfam_plot — pfam_plot • BioVizSeq

Visualization of domain in pfam result file

Usage

pfam_plot(
  pfam_file,
  the_order = NULL,
  domain_select = NULL,
  shape = "RoundRect",
  r = 0.3,
  legend_size = 15,
  domain_color = NULL
)

Arguments

pfam_file: The path of meme file or mast file.
the_order: The path of order file. A List of Gene ID , One ID Per Line.
domain_select: The domain ID which you want to align with.
shape: RoundRect or Rect.
r: The radius of rounded corners.
legend_size: The size of legend.
domain_color: The color set of domain.

Value

p

Author

Shiqi Zhao

Examples

pfam_path <- system.file("extdata", "iprscan.tsv", package = "BioVizSeq")
order_path <- system.file("extdata", "order.csv", package = "BioVizSeq")
pfam_plot(pfam_path)

pfam_plot(pfam_path, the_order=order_path)