meme_plot — meme_plot • BioVizSeq

Visualization of motif in meme file or mast file

Usage

meme_plot(
  meme_file,
  the_order = NULL,
  motif_select = NULL,
  shape = "RoundRect",
  show_motif_id = FALSE,
  r = 0.3,
  legend_size = 15,
  motif_color = NULL
)

Arguments

meme_file: The path of meme file or mast file.
the_order: The path of order file. A List of Gene ID , One ID Per Line.
motif_select: The motif ID which you want to align with.
shape: RoundRect or Rect.
show_motif_id: Display the name of the motif.
r: The radius of rounded corners.
legend_size: The size of legend.
motif_color: The color set of motif.

Value

p

Author

Shiqi Zhao

Examples


mast_path <- system.file("extdata", "mast.xml", package = "BioVizSeq")
meme_plot(mast_path)


meme_plot(mast_path, motif_select="1", show_motif_id = TRUE)


order_path <- system.file("extdata", "order.csv", package = "BioVizSeq")
meme_plot(mast_path, the_order=order_path, motif_select="1")