fastaleng

Statistical sequence length

Usage

fastaleng(fasta_file)

Arguments

fasta_file

The path of protein fasta file.

Value

data.frame

Author

Shiqi Zhao

Examples

fasta_path <- system.file("extdata", "idpep.fa", package = "BioVizSeq") 
fastaleng(fasta_path)
#>        ID length
#> 1  gene01    176
#> 2  gene02    184
#> 3  gene03    187
#> 4  gene04    187
#> 5  gene05    187
#> 6  gene06    407
#> 7  gene07    201
#> 8  gene08    394
#> 9  gene09    395
#> 10 gene10    222
#> 11 gene11    405
#> 12 gene12    151
#> 13 gene13    178
#> 14 gene14    197
#> 15 gene15    211
#> 16 gene16    149
#> 17 gene17    169
#> 18 gene18    150
#> 19 gene19    169
#> 20 gene20    217
#> 21 gene21    221
#> 22 gene22    213
#> 23 gene23    186
#> 24 gene24    179
#> 25 gene25    174
#> 26 gene26    179
#> 27 gene27    186
#> 28 gene28    432
#> 29 gene29    173
#> 30 gene30    186
#> 31 gene31    198
#> 32 gene32    254
#> 33 gene33    292
#> 34 gene34    250
#> 35 gene35    278
#> 36 gene36    236
#> 37 gene37    215
#> 38 gene38    267
#> 39 gene39    263
#> 40 gene40    229
#> 41 gene41    245
#> 42 gene42    229
#> 43 gene43    230
#> 44 gene44    248
#> 45 gene45    235
#> 46 gene46    238
#> 47 gene47    224
#> 48 gene48    223
#> 49 gene49    237
#> 50 gene50    226