cdd_plot — cdd_plot • BioVizSeq

Visualization of domain in CDD file

Usage

cdd_plot(
  cdd_file,
  fasta_file,
  the_order = NULL,
  domain_select = NULL,
  shape = "RoundRect",
  r = 0.3,
  legend_size = 15,
  domain_color = NULL
)

Arguments

cdd_file: The path of cdd file.
fasta_file: The path of fasta file.
the_order: The path of order file. A List of Gene ID , One ID Per Line.
domain_select: The domain ID which you want to align with.
shape: RoundRect or Rect.
r: The radius of rounded corners.
legend_size: The size of legend.
domain_color: The color set of domain.

Value

p

Author

Shiqi Zhao

Examples

hitdata_path <- system.file("extdata", "hitdata.txt", package = "BioVizSeq")
fa_path <- system.file("extdata", "idpep.fa", package = "BioVizSeq")
cdd_plot(hitdata_path, fa_path)


order_path <- system.file("extdata", "order.csv", package = "BioVizSeq")
cdd_plot(hitdata_path, fa_path, the_order = order_path)